Sequence File

Provides files and formats for handling sequence data. More...

Collaboration diagram for Sequence File:

Classes
class	seqan3::format_embl
	The EMBL format. More...
class	seqan3::format_fasta
	The FastA format. More...
class	seqan3::format_fastq
	The FastQ format. More...
class	seqan3::format_genbank
	The GenBank format. More...
class	seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
	A class for reading sequence files, e.g. FASTA, FASTQ ... More...
struct	seqan3::sequence_file_input_default_traits_aa
	A traits type that specifies input as amino acids. More...
struct	seqan3::sequence_file_input_default_traits_dna
	The default traits for seqan3::sequence_file_input. More...
interface	sequence_file_input_format
	The generic concept for sequence file in formats. More...
struct	seqan3::detail::sequence_file_input_format_exposer< format_type >
	Internal class used to expose the actual format interface to read sequence records from the file. More...
struct	seqan3::sequence_file_input_options< sequence_legal_alphabet >
	The options type defines various option members that influence the behaviour of all or some formats. More...
interface	sequence_file_input_traits
	The requirements a traits_type for seqan3::sequence_file_input must meet. More...
class	seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
	A class for writing sequence files, e.g. FASTA, FASTQ ... More...
interface	sequence_file_output_format
	The generic concept for sequence file out formats. More...
struct	seqan3::detail::sequence_file_output_format_exposer< format_type >
	Internal class used to expose the actual format interface to write sequence records into the file. More...
struct	seqan3::sequence_file_output_options
	The options type defines various option members that influence the behaviour of all or some formats. More...
class	seqan3::sequence_record< field_types, field_ids >
	The record type of seqan3::sequence_file_input. More...

Variables
template<typename t >
constexpr bool	seqan3::detail::is_type_list_of_sequence_file_output_formats_v = false
	Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_output_format [default is false]. More...
template<typename ... ts>
constexpr bool	seqan3::detail::is_type_list_of_sequence_file_output_formats_v< type_list< ts... > >
	Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_output_format [overload]. More...
template<typename t >
SEQAN3_CONCEPT	seqan3::detail::type_list_of_sequence_file_output_formats = is_type_list_of_sequence_file_output_formats_v<t>
	Auxiliary concept that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_output_format. More...

Detailed Description

Provides files and formats for handling sequence data.

See also

IO

Sequence File Input and Output

Variable Documentation

is_type_list_of_sequence_file_output_formats_v

template<typename t >

constexpr bool seqan3::detail::is_type_list_of_sequence_file_output_formats_v = false

constexpr

Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_output_format [default is false].

See also

seqan3::type_list_specialisationOfsequence_file_output_formats

is_type_list_of_sequence_file_output_formats_v< type_list< ts... > >

template<typename ... ts>

constexpr bool seqan3::detail::is_type_list_of_sequence_file_output_formats_v< type_list< ts... > >

constexpr

Initial value:

=
    (sequence_file_output_format<ts> && ...)

Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_output_format [overload].

See also

seqan3::type_list_specialisationOfsequence_file_output_formats

type_list_of_sequence_file_output_formats

template<typename t >

SEQAN3_CONCEPT seqan3::detail::type_list_of_sequence_file_output_formats = is_type_list_of_sequence_file_output_formats_v<t>

Auxiliary concept that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_output_format.

See also

seqan3::is_type_list_of_sequence_file_formats_v